广东省2020年首次报道E基因型柯萨奇病毒B组3型的鉴定及基因特征分析Novel Analyses of the Genetic Characteristics and Identification of Genotype E Coxsackievirus B3 Strains in Guangdong Province,China,in 2020
杨倩;曾汉日;郑焕英;严冬梅;祝双利;宋洋;王东艳;韩振志;李冀琛;张勇;许文波;
摘要(Abstract):
柯萨奇病毒B组3型(Coxsackievirus B3,CVB3)是肠道病毒中流行较为广泛的血清型之一,在全球多个国家和地区曾报道儿童急性心肌炎、无菌性脑膜炎、手足口病等的暴发流行,严重威胁儿童健康和公共卫生安全。本研究对广东省2020年手足口病患者标本中分离到的8株CVB3进行基因特征和进化分析,结果显示分离到的8株CVB3 VP1区核苷酸序列相似性为98.2%~99.5%,与原型株Nancy的核苷酸序列相似性在77.9%~78.5%之间,与其他CVB3中国大陆流行株的核苷酸序列相似性为79.6%~82.2%。8株CVB3均为E基因型,为广东省首次报道。8株CVB3分离株在进化树上聚集,提示病毒发生了局部传播。全基因组序列分析提示2株广东CVB3分离株在非结构蛋白区有重组现象的发生。本研究为E基因型CVB3在我国的流行传播和疾病防控提供基础资料。
关键词(KeyWords): 柯萨奇病毒B组3型;基因特征;手足口病;E基因型
基金项目(Foundation): 十三五国家科技重大专项课题(项目号:2018ZX10713002),题目:病毒性传染病病原谱和病毒基因变异变迁规律研究;十三五国家科技重大专项课题(项目号:2018ZX10305409-004-002),题目:宏基因组学快速感染诊断产品和传染病原分类方法开发;; 北京市自然科学基金-海淀原始创新联合基金项目(L192014),题目:EV-A71疫苗大规模应用后对我国手足口病病原谱的影响及其保护效果评价研究~~
作者(Authors): 杨倩;曾汉日;郑焕英;严冬梅;祝双利;宋洋;王东艳;韩振志;李冀琛;张勇;许文波;
DOI: 10.13242/j.cnki.bingduxuebao.004072
参考文献(References):
- [1] Oberste M S, Maher K, Williams A J, DybdahlSissoko N,Brown B A,Gookin M S,Pe?aranda S,Mishrik N,Uddin M,Pallansch M A. Species-specific RT-PCR amplification of human enteroviruses:a tool for rapid species identification of uncharacterized enteroviruses[J]. J Gen Virol,2006,87(1):119-128.
- [2] Lindberg AM, St?lhandske PO, Pettersson U. S Genome of coxsackievirus B3[J]. Virology,1987,156(1):50-63.
- [3] Thoelen I,Lemey P,Donck I,Beuselinck K,Lindberg AM,Ranst MV. Molecular typing and epidemiology of enteroviruses identified from an outbreak of aseptic meningitis in Belgium during the summer of 2000[J]. J Med Virol,2003,70(3):420-429.
- [4] Kumar A,Shukla D,Kumar R,Idris MZ,Jauhari P,Srivastava S, Dhole TN. Molecular identification of enteroviruses associated with aseptic meningitis in children from India[J]. Arch Virol,2013,158(1):211-215.
- [5] Wu Z, Du J, Zhang T, Xue Y, Yang F, Jin Q.Recombinant human Coxsackievirus B3 from children with acute myocarditis in China[J]. J ClinMicrobiol,2013,51(9):3083–3086.
- [6] Han Z,Zhang Y,Huang K, Wang J,Tian H,Song Y,Yang Q,Yan D,Zhu S,Yao M,Wang X,Xu W.Two Coxsackievirus B3 outbreaks associated with hand,foot,and mouth disease in China and the evolutionary history worldwide[J]. BMC Infect Dis, 2019, 19(1):466.
- [7] Guo H,Li Y,Liu G,Jiang Y,Shen S,Bi R,Huang H,Cheng T,Wang C,Wei W. A second open reading frame in human enterovirus determines viral replication in intestinal epithelial cells[J]. Nature Communications,2019,10(1):4066.
- [8] Tan X,Li L,Zhang B,Jorba J,Su X,Ji T,Yang D,Lv L, Li J, Xu W. Molecular epidemiology of coxsackievirus A6 associated with outbreaks of hand,foot,and mouth disease in Tianjin,China,in 2013[J].Arch Virol,2015,160(4):1097-1104.
- [9] Wang H,Tao Z,Li Y,X. Lin X,Yoshida H,Song L,Zhang Y,Wang S,Cui N,Xu W,Song Y,Xu A.Environmental surveillance of human enteroviruses in shandong province,China,2008 to 2012:serotypes,temporal fluctuation,and molecular epidemiology[J].Appl Environ Microbiol,2014,80(15):4683-4691.
- [10]Luo H,Zhang Y,Wang X,Yu W,Wen N,Yan D,Wang H,Wushouer F,Wang H,Xu A,Zheng J,Li D,Cui H,Wang J,Zhu S,Feng Z,Cui F,Ning J,Hao L,Fan C,Ning G,Yu H,Wang S,Liu D,Wang D,Fu J,Gou A,Zhang G,Huang G,Chen Y,Mi S,Liu Y,Yin D,Zhu H,Fan X,Li X,Ji Y,Li K,Tang H,Xu W,Wang Y,Yang W. Identification and control of a poliomyelitis outbreak in Xinjiang,China[J]. N Engl J Med,2013,369(21):1981–1990.
- [11]韩振志,张勇,红梅,黄克强,宋洋,杨倩,严冬梅,祝双利,许文波.两株西藏CV-B3的全基因组特征及溯源分析[J/OL].病毒学报,2018,34(06):828-838.DOI:10.13242/j.cnki.bingduxuebao.003468.
- [12]Tamura K,Peterson D,Peterson N,Stecher G,Nei M,Kumar S. MEGA5:molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance,and maximum parsimony methods[J]. Mol Biol Evol,2011,28(10):2731–2739.
- [13]Salminen MO,Carr JK,Burke DS,McCutchan FE.Identification of breakpoints in intergenotypic recombinants of hiv type 1 by bootscanning[J]. AIDS Res Hum Retroviruses,1995,11(11):1423-1425.
- [14]Zhang Y,Wang J,Guo W,Wang H,Zhu S,Wang D,Bai R,Li X,Yan D,Wang H,Zhang Y,Zhu Z,Tan X,An H,Xu A,Xu W. Emergence and transmission pathways of rapidly evolving evolutionary branch C4a strains of human enterovirus 71 in the Central Plain of China[J/OL]. PLoS One,2011,6(11):e27895.
- [15]Han Z,Song Y,Xiao J,Jiang L,Huang W,Wei H,Li J,Zeng H,Yu Q,Li J,Yu D,Zhang Y,Li C,Zhan Z,Shi Y,Xiong Y,Wang X,Ji T,Yang Q,Zhu S,Yan D,Xu W,Zhang Y. Genomic epidemiology of coxsackievirus A16 in mainland of China,2000–18[J/OL]. Virus Evolution,2020,6(2):veaa084.
- [16]Song Y,Zhang Y,Han Z,Xu W,Xiao J,Wang X,Wang J,Yang J,Yu Q,Yu D,Chen J,Huang W,Li J,Xie T,Lu H,Ji T,Yang Q,Yan D,Zhu S,Xu,W. Genetic recombination in fast-spreading coxsackievirus A6 variants:a potential role in evolution and pathogenicity[J/OL]. Virus Evolution, 2020, 6(2):veaa048.
- [17]Tao Z,Li B,Xu A,Liu Y,Song L,Wang S,Xiong P,Lin X,Song Y. Seroprevalence of coxsackievirus B3in Yantai,China[J]. Jpn J Infect Dis,2013,66(6):537–538.
- [18]Abedi G,Watson J,Nix W,Oberste MS,Gerber S.Enterovirus and parechovirus surveillance-united states,2014-2016[J]. MMWR Surveill Summ,2018,67(18):515-518.
- [19]Zheng H,Lu J,Zhang Y,Yoshida H,Guo X,Liu L,Li H,Zeng H,Fang L,Mo Y,Yi L,Chosa T,Xu W, Changwen Ke. 2013. Prevalence of nonpolio enteroviruses in the sewage of guangzhou city,China,from 2009 to 2012[J]. Appl Environ Microbiol,2013,79(24):7679-7683.
- [20]何水珍,闫强,徐雪荣,葛胜祥,夏宁邵,牛建军.一株EV71-B5亚型病毒的分离鉴定[J].海峡预防医学杂志,2013,19(4):1-4.
- [21]Yang Q,Zhang Y,Yan D,Zhu S,Wang D,Ji T,Huang Wn. Isolation of an imported subgenotype B5strain of human enterovirus A71 in Chongqing City,China,2014[J/OL]. J Virol,2016,13:115.
- [22]Ma Z,Zha J,Yang J,Zhang X,Zhang X,Hu J,Yang H,Dong H, Ding W,Yang M. Epidemiological and genetic analysis of hand-foot-mouth disease by enterovirus A71 in Taizhou,P. R. China,between 2010and 2013[J]. J Med Viro,2017,89(5):782-790.
- [23]Ooi MH,Wong SC,Podin Y,Akin W,Sel S,Mohan A, Chieng CH,Perera D,Clear D,Wong D,Blake E, Cardosa J, Solomon T. Human enterovirus 71disease in Sarawak,Malaysia:a prospective clinical,virological, and molecular epidemiological study[J].Clin Infect Dis,2007,44(5):v646-656.