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2013, 02, v.29 238-244
呼吸道病毒多病原检测技术研究进展
基金项目(Foundation): CNIC-US CDC合作项目资助,项目名称:“Developing Sustainable Influenza Surveillance Networks and Response to Avian and Pandemic Influenza in China”
邮箱(Email):
DOI: 10.13242/j.cnki.bingduxuebao.002371
发布时间: 2013-03-29
出版时间: 2013-03-29
网络发布时间: 2013-03-29
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摘要:

呼吸道病毒感染是导致人群发病和死亡的主要原因之一。通过多重病原检测迅速筛查大量致病原,已成为呼吸道病毒感染检测的重要技术。本文介绍了呼吸道病毒多病原检测技术及一些对呼吸道病毒检测有潜在应用价值的新兴技术。这些技术包括多重呼吸道病毒快速分离培养技术、传统多重逆转录PCR技术、多重实时定量PCR技术、微芯片技术、质谱技术及宏基因组技术等。这些技术的发展和应用,不但有助于提高呼吸道病毒感染的快速诊断和治疗,而且也将促进新型呼吸道病毒的发现。

Abstract:

Viral respiratory tract infection is among the leading causes of mortality and morbidity worldwide.Rapid screening methods for multiple detection of a wider range of pathogens become very important for diagnosis of respiratory infection.This article describes conventional detection technologies and several emerging multiplex assays that have pot-ential applications in the diagnosis and monitoring of respiratory viral infections.These techniques include new rapid culture system,multiplex reverse transcription-PCR,real-time reverse transcription PCR,solid and suspension microarrays,mass spectrometry as well as metagenomics methods.The development and application of these techniques will not only improve the ability of rapid detection and control of viral respiratory infection,but play pivotal roles in the rapid characterization of new viral pathogens.

参考文献

[1]CHEW F T,DORAISINGHAM S,LING A E,et al.Seasonal trends of viral respiratory tract infections in thetropics[J].Epidemiol Infect,1998,121(1):121-128.

[2]MIZGERD J P.Lung infection--apublic health priority[J/OL].PLoS Med,2006,3(2):e76.

[3]SHAY D K,HOLMAN R C,NEWMAN R D,et al.Bronchiolitis-associated hospitalizations among US children,1980-1996[J].JAMA,1999,282(15):1440-1446.

[4]WEBER M W,MULHOLLAND E K,GREENWOODB M.Respiratory syncytial virus infection in tropicaland developing countries[J].Trop Med Int Health,1998,3(4):268-280.

[5]SHU Y L,FANG L Q,DE VLAS S J,et al.Dual sea-sonal patterns for influenza,China[J].Emerg InfectDis,2010,16(4):725-726.

[6]WANG D Y,GAO R B,LI X D,et al.[Establishmentof a method for rapid detection of the nucleic acid of thenovel A(H1N1)influenza virus][J].Chinese Journalof Virology,2009,25Suppl(1-3).

[7]NOKSO-KOIVISTO J,PITKARANTA A,BLOMQV-IST S,et al.Viral etiology of frequently recurring re-spiratory tract infections in children[J].Clin InfectDis,2002,35(5):540-546.

[8]DAVIES H D,MATLOW A,PETRIC M,et al.Pro-spective comparative study of viral,bacterial and atypi-cal organisms identified in pneumonia and bronchiolitis inhospitalized Canadian infants[J].Pediatr Infect Dis J,1996,15(4):371-375.

[9]LASALA P R,BUFTON K K,ISMAIL N,et al.Prospective comparison of R-mix shell vial system withdirect antigen tests and conventional cell culture for re-spiratory virus detection[J].J Clin Virol,2007,38(3):210-216.

[10]LEE J H,CHUN J K,KIM D S,et al.Identificationof adenovirus,influenza virus,parainfluenza virus,andrespiratory syncytial virus by two kinds of multiplexpolymerase chain reaction(PCR)and a shell vialculture in pediatric patients with viral pneumonia[J].Yonsei Med J,2010,51(5):761-767.

[11]BELLAU-PUJOL S,VABRET A,LEGRAND L,etal.Development of three multiplex RT-PCR assays forthe detection of 12respiratory RNA viruses[J].JVirol Methods,2005,126(1-2):53-63.

[12]KIM S R,KI C S,LEE N Y.Rapid detection andidentification of 12respiratory viruses using a dualpriming oligonucleotide system-based multiplex PCRassay[J].J Virol Methods,2009,156(1-2):111-116.

[13]DREWS S J,BLAIR J,LOMBOS E,et al.Use of theSeeplex RV Detection kit for surveillance of respiratoryviral outbreaks in Toronto,Ontario,Canada[J].AnnClin Lab Sci,2008,38(4):376-379.

[14]MILLER M B,TANG Y W.Basic concepts ofmicroarrays and potential applications in clinical microbiol-ogy[J].Clin Microbiol Rev,2009,22(4):611-633.

[15]LI H,MCCORMAC M A,ESTES R W,et al.Simul-taneous detection and high-throughput identification ofapanel of RNA viruses causing respiratory tract infec-tions[J].J Clin Microbiol,2007,45(7):2105-2109.

[16]EGGERS M,ROTH B,SCHWEIGER B,et al.Comparison of the novel ResPlex III assay and existingtechniques for the detection and subtyping of influenzavirus during the influenza season 2006-2007[J].Eur JClin Microbiol Infect Dis,2012,31(6):1257-1265.

[17]BALADA-LLASAT J M,LARUE H,KELLY C,etal.Evaluation of commercial ResPlex II v2.0,Multi-Code-PLx,and xTAG respiratory viral panels for thediagnosis of respiratory viral infections in adults[J].JClin Virol,2011,50(1):42-45.

[18]CANNON G A,CARR M J,YANDLE Z,et al.Alow density oligonucleotide microarray for the detectionof viral and atypical bacterial respiratory pathogens[J].J Virol Methods,2010,163(1):17-24.

[19]JANNETTO P J,BUCHAN B W,VAUGHAN K A,et al.Real-time detection of influenza a,influenza B,and respiratory syncytial virus a and B in respiratoryspecimens by use of nanoparticle probes[J].J ClinMicrobiol,2010,48(11):3997-4002.

[20]PORITZ M A,BLASCHKE A J,BYINGTON C L,etal.FilmArray,an automated nested multiplex PCRsystem for multi-pathogen detection:development andapplication to respiratory tract infection[J/OL].PLoSOne,2011,6(10):e26047.

[21]TEO J,DI PIETRO P,SAN BIAGIO F,et al.Vere-Flu:an integrated multiplex RT-PCR and microarrayassay for rapid detection and identification of humaninfluenza A and B viruses using lab-on-chip technology[J].Arch Virol,2011,156(8):1371-1378.

[22]ECKER D J,SAMPATH R,MASSIRE C,et al.IbisT5000:a universal biosensor approach for microbiology[J].Nat Rev Microbiol,2008,6(7):553-558.

[23]SAMPATH R,RUSSELL K L,MASSIRE C,et al.Global surveillance of emerging Influenza virus geno-types by mass spectrometry[J/OL].PLoS One,2007,2(5):e489.

[24]BRIESE T,PALACIOS G,KOKORIS M,et al.Diag-nostic system for rapid and sensitive differential detec-tion of pathogens[J].Emerg Infect Dis,2005,11(2):310-313.

[25]LAMSON D,RENWICK N,KAPOOR V,et al.MassTag polymerase-chain-reaction detection of respir-atory pathogens,including a new rhinovirus genotype,that caused influenza-like illness in New York Stateduring 2004-2005[J].J Infect Dis,2006,194(10):1398-1402.

[26]DOELLINGER J,SCHROEDER K,WITT N,et al.Comparison of real-time PCR and MassTag PCR forthe multiplex detection of highly pathogenic agents[J].Mol Cell Probes,2012,26(5):177-181.

[27]BECK E T,JURGENS L A,KEHL S C,et al.Devel-opment of a rapid automated influenza A,influenza B,and respiratory syncytial virus A/B multiplex real-timeRT-PCR assay and its use during the 2009 H1N1swine-origin influenza virus epidemic in Milwaukee,Wisconsin[J].J Mol Diagn,2010,12(1):74-81.

[28]KODANI M,YANG G,CONKLIN L M,et al.Application of TaqMan low-density arrays for simulta-neous detection of multiple respiratory pathogens[J].J Clin Microbiol,2011,49(6):2175-82.

[29]CALIENDO A M.Multiplex PCR and emerging tech-nologies for the detection of respiratory pathogens[J].Clin Infect Dis,2011,52Suppl 4(326-330).

[30]MOORE C,HIBBITTS S,OWEN N,et al.Develop-ment and evaluation of a real-time nucleic acid sequencebased amplification assay for rapid detection of influen-za A[J].J Med Virol,2004,74(4):619-628.

[31]SCHOUTEN J P,MCELGUNN C J,WAAIJER R,etal.Relative quantification of 40nucleic acid sequencesby multiplex ligation-dependent probe amplification[J/OL].Nucleic Acids Res,2002,30(12):e57.

[32]DABISCH-RUTHE M,VOLLMER T,ADAMS O,etal.Comparison of three multiplex PCR assays for thedetection of respiratory viral infections:evaluation ofxTAG respiratory virus panel fast assay,RespiFinder19assay and RespiFinder SMART 22assay[J].BMCInfect Dis,2012,12(1):163.

[33]BERGVAL I L,VIJZELAAR R N,DALLA COSTAE R,et al.Development of multiplex assay for rapidcharacterization of Mycobacterium tuberculosis[J].JClin Microbiol,2008,46(2):689-699.

[34]WU L T,CURRAN M D,ELLIS J S,et al.Nucleicacid dipstick test for molecular diagnosis of pandemicH1N1[J].J Clin Microbiol,2010,48(10):3608-3613.

[35]LEE H H,DINEVA M A,CHUA Y L,et al.Simpleamplification-based assay:a nucleic acid-based point-of-care platform for HIV-1testing[J].J Infect Dis,2010,201Suppl 1:S65-72.

[36]DINEVA M A,CANDOTTI D,FLETCHER-BROWN F,et al.Simultaneous visual detection ofmultiple viral amplicons by dipstick assay[J].J ClinMicrobiol,2005,43(8):4015-4021.

[37]WANG D,COSCOY L,ZYLBERBERG M,et al.Microarray-based detection and genotyping of viralpathogens[J].Proc Natl Acad Sci U S A,2002,99(24):15687-15692.

[38]WANG D,URISMAN A,LIU Y T,et al.Viraldiscovery and sequence recovery using DNA microar-rays[J].PLoS Biol,2003,1(2):E2.

[39]CHIU C Y,URISMAN A,GREENHOW T L,et al.Utility of DNA microarrays for detection of viruses inacute respiratory tract infections in children[J].J Ped-iatr,2008,153(1):76-83.

[40]ROTA P A,OBERSTE M S,MONROE S S,et al.Characterization of a novel coronavirus associated withsevere acute respiratory syndrome[J].Science,2003,300(5624):1394-1399.

[41]CHIU C Y,ROUSKIN S,KOSHY A,et al.Microar-ray detection of human parainfluenzavirus 4infectionassociated with respiratory failure in an immunocompe-tent adult[J/OL].Clin Infect Dis,2006,43(8):e71-76.

[42]KISTLER A,AVILA P C,ROUSKIN S,et al.Pan-viral screening of respiratory tract infections in adultswith and without asthma reveals unexpected humancoronavirus and human rhinovirus diversity[J].JInfect Dis,2007,196(6):817-825.

[43]CHIU C Y,ALIZADEH A A,ROUSKIN S,et al.Diagnosis of a critical respiratory illness caused byhuman metapneumovirus by use of a pan-virus microar-ray[J].J Clin Microbiol,2007,45(7):2340-2343.

[44]GRENINGER A L,CHEN E C,SITTLER T,et al.A metagenomic analysis of pandemic influenza A(2009H1N1)infection in patients from North America[J/OL].PLoS One,2010,5(10):e13381.

[45]PALACIOS G,QUAN P L,JABADO O J,et al.Panmicrobial oligonucleotide array for diagnosis of in-fectious diseases[J].Emerg Infect Dis,2007,13(1):73-81.

[46]GARDNER S N,JAING C J,MCLOUGHLIN K S,etal.A microbial detection array(MDA)for viral and bacte-rial detection[J].BMC Genomics,2010,11:668.

[47]ERLANDSSON L,ROSENSTIERNE M W,MCLOU-GHLIN K,et al.The microbial detection array com-bined with random Phi29-amplification used as a diag-nostic tool for virus detection in clinical samples[J/OL].PLoS One,2011,6(8):e22631.

[48]YONGFENG H,FAN Y,JIE D,et al.Direct patho-gen detection from swab samples using a new high-throughput sequencing technology[J].Clin MicrobiolInfect,2011,17(2):241-244.

[49]MAHONY J B,BLACKHOUSE G,BABWAH J,etal.Cost analysis of multiplex PCR testing for diagno-sing respiratory virus infections[J].J Clin Microbiol,2009,47(9):2812-2817.

[50]BRUNSTEIN J D,CLINE C L,MCKINNEY S,et al.Evidence from multiplex molecular assays for complexmultipathogen interactions in acute respiratory infec-tions[J].J Clin Microbiol,2008,46(1):97-102

基本信息:

DOI:10.13242/j.cnki.bingduxuebao.002371

中图分类号:R373

引用信息:

[1]隋竑弢,王大燕,舒跃龙.呼吸道病毒多病原检测技术研究进展[J].病毒学报,2013,29(02):238-244.DOI:10.13242/j.cnki.bingduxuebao.002371.

基金信息:

CNIC-US CDC合作项目资助,项目名称:“Developing Sustainable Influenza Surveillance Networks and Response to Avian and Pandemic Influenza in China”

发布时间:

2013-03-29

出版时间:

2013-03-29

网络发布时间:

2013-03-29

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