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2025, 02, v.41 608-617
液-液相分离在病毒感染中的研究进展
基金项目(Foundation): 中国医学科学院医学与健康科技创新工程(项目号:2021-I2M-1-038),题目:应对新发突发传染病应急防控生物安全保障关键技术研究; 国家自然科学基金项目(项目号:32400139),题目:MOV10非经典途径募集DCP2介导LINE-1 RNA脱帽机制的研究~~
邮箱(Email): j2024080001@pumc.edu.cn;shancen@imb.pumc.edu.cn;
DOI: 10.13242/j.cnki.bingduxuebao.240245
摘要:

液-液相分离(Liquid-liquid phase separation,LLPS)是真核细胞中无膜细胞器形成的基础,这一过程促进了生物组分与化学反应在时间与空间上的精细分隔,是真核细胞生物学的一项核心特征。这些由LLPS驱动的无膜细胞器,在调控基因表达、应对环境压力、修复染色质损伤以及介导免疫反应等生物学途径中扮演着不可或缺的角色。值得注意的是,LLPS相关蛋白的功能异常与病毒感染之间存在深刻的联系,多种病毒复制的不同环节均有相分离结构的参与,且宿主在应激状态下会形成相分离结构抵抗病毒感染。本文从LLPS参与病毒感染的机制及宿主基于LLPS衍生的抗病毒策略两方面阐述相分离在病毒感染中的调控作用,深入了解相分离在病毒感染过程中发挥的作用。

Abstract:

Liquid-liquid phase separation(LLPS) constitutes the basis of the formation of membraneless organelles in eukaryotic cells, facilitating the spatial and temporal segregation of biological components and chemical reactions This process is a core feature of eukaryotic cell biology. LLPS-driven membraneless organelles play indispensable roles in key biological pathways, such as the regulation of gene expression, the response to environmental stress, chromatin damage repair, and the mediation of immune responses. Notably, a profound connection exists between the dysfunction of LLPS-related proteins and viral infections. Phaseseparating structures are involved in various stages of viral replication, and host cells can form LLPS-driven granule structures to combat virus infection. This review discusses the mechanism by which LLPS participates in viral infections and the host's antiviral strategies derived from LLPS, providing a comprehensive understanding of the role LLPS plays in viral infections.

参考文献

[1] Fang X, Wang L, Ishikawa R, et al. Arabidopsis FLL2 promotes liquid-liquid phase separation of polyadenylation complexes[J]. Nature, 2019, 569(7755):265-269. DOI:10. 1038/s41586-019-1165-8.

[2] Zheng LW, Liu CC, Yu KD. Phase separations in oncogenesis, tumor progressions and metastasis:a glance from hallmarks of cancer[J]. J Hematol Oncol,2023, 16(1):123. DOI:10. 1186/s13045-023-01522-5.

[3] Zhang S, Pei G, Li B, et al. Abnormal phase separation of biomacromolecules in human diseases[J].Acta Biochim Biophys Sin(Shanghai), 2023, 55(7):1133-1152. DOI:10. 3724/abbs. 2023139.

[4] Ning W, Guo Y, Lin S, et al. DrLLPS:a data resource of liquid-liquid phase separation in eukaryotes[J]. Nucleic Acids Res, 2020, 48(D1):D288-D295.DOI:10. 1093/nar/gkz1027.

[5] Wei W, Bai L, Yan B, et al. When liquid-liquid phase separation meets viral infections[J]. Front Immunol,2022, 13:985622.DOI:10. 3389/fimmu. 2022. 985622.

[6] White JP, Lloyd RE. Regulation of stress granules in virus systems[J]. Trends Microbiol, 2012, 20(4):175-183. DOI:10. 1016/j. tim. 2012. 02. 001.

[7] Noda NN, Wang Z, Zhang H. Liquid-liquid phase separation in autophagy[J]. J Cell Biol, 2020, 219(8):e202004062. DOI:10. 1083/jcb. 202004062.

[8] Zhang H, Ji X, Li P, et al. Liquid-liquid phase separation in biology:mechanisms, physiological functions and human diseases[J]. Sci China Life Sci,2020, 63(7):953-985. DOI:10. 1007/s11427-020-1702-x.

[9] Alberti S, Gladfelter A, Mittag T. Considerations and challenges in studying liquid-liquid phase separation and biomolecular condensates[J]. Cell, 2019, 176(3):419-434. DOI:10. 1016/j. cell. 2018. 12. 035.

[10]Newton JC, Naik MT, Li GY, et al. Phase separation of the LINE-1 ORF1 protein is mediated by the Nterminus and coiled-coil domain[J]. Biophys J, 2021,120(11):2181-2191. DOI:10. 1016/j.bpj. 2021. 03. 028.

[11]Wu S, Wen J, Perrett S. Unravelling the microscopic characteristics of intrinsically disordered proteins upon liquid-liquid phase separation[J]. Essays Biochem,2022, 66(7):891-900. DOI:10. 1042/EBC20220148.

[12]Alberti S, Dormann D. Liquid-liquid phase separation in disease[J]. Annu Rev Genet, 2019, 53:171-194.DOI:10. 1146/annurev-genet-112618-043527.

[13]Gu X, Zhuang A, Yu J, et al. Phase separation drives tumor pathogenesis and evolution:all roads lead to Rome[J]. Oncogene, 2022, 41(11):1527-1535. DOI:10. 1038/s41388-022-02195-z.

[14]Li H, Ernst C, Kolonko-Adamska M, et al. Phase separation in viral infections[J]. Trends Microbiol,2022, 30(12):1217-1231. DOI:10. 1016/j.tim. 2022. 06. 005.

[15]Liu D, Yang J, Cristea IM. Liquid-liquid phase separation in innate immunity[J]. Trends Immunol,2024, 45(6):454-469. DOI:10. 1016/j.it. 2024. 04. 009.

[16]Zhang X, Zheng R, Li Z, et al. Liquid-liquid phase separation in viral function[J]. J Mol Biol, 2023, 435(16):167955. DOI:10. 1016/j. jmb. 2023. 167955.

[17]Wagh K, Garcia DA, Upadhyaya A. Phase separation in transcription factor dynamics and chromatin organization[J]. Curr Opin Struct Biol, 2021, 71:148-155. DOI:10. 1016/j. sbi. 2021. 06. 009.

[18]Li C, Li Z, Wu Z, et al. Phase separation in gene transcription control[J]. Acta Biochim Biophys Sin(Shanghai), 2023, 55(7):1052-1063. DOI:10. 3724/abbs. 2023099.

[19]Hyman AA, Weber CA, Jülicher F. Liquid-liquid phase separation in biology[J]. Annu Rev Cell Dev Biol, 2014, 30:39-58. DOI:10. 1146/annurev-cellbio-100913-013325.

[20]Protter DSW, Parker R. Principles and properties of stress granules[J]. Trends Cell Biol, 2016, 26(9):668-679. DOI:10. 1016/j. tcb. 2016. 05. 004.

[21]Maccaroni K, Torre ML, Burla R, et al. Phase separation in the nucleus and at the nuclear periphery during post-mitotic nuclear envelope reformation[J].Cells, 2022, 11(11):1749. DOI:10. 3390/cells11111749.

[22]Reddy VRAP, Campbell EA, Wells J, et al.Birnaviridae virus factories show features of liquid-liquid phase separation and are distinct from paracrystalline arrays of virions observed by electron microscopy[J]. J Virol, 2022, 96(6):e0202421. DOI:10. 1128/jvi. 02024-21.

[23]Wu C, Holehouse AS, Leung DW, et al. Liquid phase partitioning in virus replication:observations and opportunities[J]. Annu Rev Virol, 2022, 9(1):285-306. DOI:10. 1146/annurev-virology-093020-013659.

[24]Lipkin WI, Schneemann A, Solbrig MV. Borna disease virus:implications for human neuropsychiatric illness[J]. Trends Microbiol, 1995, 3(2):64-69. DOI:10. 1016/s0966-842x(00)88877-0.

[25]Hirai Y, Tomonaga K, Horie M. Borna disease virus phosphoprotein triggers the organization of viral inclusion bodies by liquid-liquid phase separation[J]. Int J Biol Macromol, 2021, 192:55-63. DOI:10. 1016/j.ijbiomac. 2021. 09. 153.

[26]Jacob ST, Crozier I, Fischer WA, et al. Ebola virus disease[J]. Nat Rev Dis Primers, 2020, 6(1):13.DOI:10. 1038/s41572-020-0147-3.

[27]Bodmer BS, Vallbracht M, Ushakov DS, et al. Ebola virus inclusion bodies are liquid organelles whose formation is facilitated by nucleoprotein oligomerization[J]. Emerg Microbes Infect, 2023, 12(2):2223727.DOI:10. 1080/22221751. 2023. 2223727.

[28]Diot C, Richard CA, Risso-Ballester J, et al.Hardening of respiratory syncytial virus inclusion bodies by cyclopamine proceeds through perturbation of the interactions of the M2-1 protein with RNA and the P protein[J]. Int J Mol Sci, 2023, 24(18):13862. DOI:10. 3390/ijms241813862.

[29]Zhou S, Fu Z, Zhang Z, et al. Liquid-liquid phase separation mediates the formation of herpesvirus assembly compartments[J]. J Cell Biol, 2023, 222(1):e202201088. DOI:10. 1083/jcb. 202201088.

[30]Charman M, Grams N, Kumar N, et al. A viral biomolecular condensate coordinates assembly of progeny particles[J]. Nature, 2023, 616(7956):332-338. DOI:10. 1038/s41586-023-05887-y.

[31]Rao S, Hassine S, Monette A, et al. HIV-1 requires Staufen1 to dissociate stress granules and to produce infectious viral particles[J]. RNA, 2019, 25(6):727-736. DOI:10. 1261/rna. 069351. 118.

[32]Kakisaka M, Yamada K, Yamaji-Hasegawa A, et al.Intrinsically disordered region of influenza A NP regulates viral genome packaging via interactions with viral RNA and host PI(4, 5)P2[J]. Virology, 2016,496:116-126. DOI:10. 1016/j. virol. 2016. 05. 018.

[33]Scoca V, Morin R, Collard M, et al. HIV-induced membraneless organelles orchestrate post-nuclear entry steps[J]. J Mol Cell Biol, 2023, 14(11):mjac060.DOI:10. 1093/jmcb/mjac060.

[34]汪圆松,乔嘉璐,孙宾莲,等.应激颗粒在冠状病毒复制中的作用及机制[J].病毒学报,2023, 39(4):1134-1141. DOI:10. 13242/j. cnki. bingduxuebao. 004304.

[35]Liu Y, Yao Z, Lian G, et al. Biomolecular phase separation in stress granule assembly and virus infection[J]. Acta Biochim Biophys Sin(Shanghai), 2023, 55(7):1099-1118. DOI:10. 3724/abbs. 2023117.

[36]Brownsword MJ, Locker N. A little less aggregation a little more replication:Viral manipulation of stress granules[J]. Wiley Interdiscip Rev RNA, 2023, 14(1):e1741. DOI:10. 1002/wrna. 1741.

[37]Ariumi Y, Kuroki M, Kushima Y, et al. Hepatitis C virus hijacks P-body and stress granule components around lipid droplets[J]. J Virol, 2011, 85(14):6882-6892. DOI:10. 1128/JVI. 02418-10.

[38]Blázquez AB, Martín-Acebes MA, Poderoso T, et al.Relevance of oxidative stress in inhibition of eIF2 alpha phosphorylation and stress granules formation during Usutu virus infection[J]. PLoS Negl Trop Dis, 2021,15(1):e0009072. DOI:10. 1371/journal.pntd. 0009072.

[39]Legros S, Boxus M, Gatot JS, et al. The HTLV-1Tax protein inhibits formation of stress granules by interacting with histone deacetylase 6[J]. Oncogene,2011, 30(38):4050-4062. DOI:10. 1038/onc. 2011. 120.

[40]Yang X, Hu Z, Fan S, et al. Picornavirus 2A protease regulates stress granule formation to facilitate viral translation[J]. PLoS Pathog, 2018, 14(2):e1006901.DOI:10. 1371/journal. ppat. 1006901.

[41]Donnelly N, Gorman AM, Gupta S, et al. The eIF2αkinases:their structures and functions[J]. Cell Mol Life Sci, 2013, 70(19):3493-3511. DOI:10. 1007/s00018-012-1252-6.

[42]Khaperskyy DA, Emara MM, Johnston BP, et al.Influenza a virus host shutoff disables antiviral stressinduced translation arrest[J]. PLoS Pathog, 2014, 10(7):e1004217. DOI:10. 1371/journal. ppat. 1004217.

[43]Hou S, Kumar A, Xu Z, et al. Zika virus hijacks stress granule proteins and modulates the host stress response[J]. J Virol, 2017, 91(16):e00474-17. DOI:10. 1128/JVI. 00474-17.

[44]Lindquist ME, Mainou BA, Dermody TS, et al.Activation of protein kinase R is required for induction of stress granules by respiratory syncytial virus but dispensable for viral replication[J]. Virology, 2011, 413(1):103-110. DOI:10. 1016/j. virol. 2011. 02. 009.

[45]Scoca V, Di Nunzio F. Membraneless organelles restructured and built by pandemic viruses:HIV-1 and SARS-CoV-2[J]. J Mol Cell Biol, 2021, 13(4):259-268. DOI:10. 1093/jmcb/mjab020.

[46]Rao S, Cinti A, Temzi A, et al. HIV-1 NC-induced stress granule assembly and translation arrest are inhibited by the dsRNA binding protein Staufen1[J].RNA, 2018, 24(2):219-236. DOI:10. 1261/rna. 064618. 117.

[47]万延民,仇超,张晓燕,等. HIV-1感染的T细胞免疫应答与病毒免疫逃逸[J].病毒学报,2008, 24(4):326-333.DOI:10. 3321/j.issn:1000-8721. 2008. 04. 016.

[48]Shi J, Li Z, Xu R, et al. The PERK/PKR-eIF2αpathway negatively regulates porcine hemagglutinating encephalomyelitis virus replication by attenuating global protein translation and facilitating stress granule formation[J]. J Virol, 2022, 96(1):e0169521. DOI:10. 1128/JVI. 01695-21.

[49]Qin Q, Hastings C, Miller CL. Mammalian orthoreovirus particles induce and are recruited into stress granules at early times postinfection[J]. J Virol,2009, 83(21):11090-11101. DOI:10. 1128/JVI. 01239-09.

[50]Wu X, Zhang L, Liu C, et al. The NS2B-PP1α-eIF2αaxis:inhibiting stress granule formation and boosting zika virus replication[J]. PLoS Pathog, 2024, 20(6):e1012355. DOI:10. 1371/journal. ppat. 1012355.

[51]Kang W, Wang Y, Yang W, et al. Research progress on the structure and function of G3BP[J]. Front Immunol, 2021, 12:718548. DOI:10. 3389/fimmu. 2021. 718548.

[52]Tourrière H, Chebli K, Zekri L, et al. The RasGAPassociated endoribonuclease G3BP mediates stress granule assembly[J]. J Cell Biol, 2023, 222(11):e200212128072023new. DOI:10. 1083/jcb. 200212128072023new.

[53]Cobos Jiménez V, Martinez FO, Booiman T, et al.G3BP1 restricts HIV-1 replication in macrophages and T-cells by sequestering viral RNA[J]. Virology, 2015,486:94-104. DOI:10. 1016/j. virol. 2015. 09. 007.

[54]Dougherty JD, White JP, Lloyd RE. Poliovirusmediated disruption of cytoplasmic processing bodies[J]. J Virol, 2011, 85(1):64-75. DOI:10. 1128/JVI. 01657-10.

[55]Lloyd RE. Regulation of stress granules and P-bodies during RNA virus infection[J]. Wiley Interdiscip Rev RNA, 2013, 4(3):317-331. DOI:10. 1002/wrna. 1162.

[56]Murigneux E, Softic L, AubéC, et al. Proteomic analysis of SARS-CoV-2 particles unveils a key role of G3BP proteins in viral assembly[J]. Nat Commun,2024, 15(1):640. DOI:10. 1038/s41467-024-44958-0.

[57]Yang Z, Johnson BA, Meliopoulos VA, et al.Interaction between host G3BP and viral nucleocapsid protein regulates SARS-CoV-2 replication and pathogenicity[J]. Cell Rep, 2024, 43(3):113965.DOI:10. 1016/j. celrep. 2024. 113965.

[58]Li K, Wang C, Yang F, et al. Virus-host interactions in foot-and-mouth disease virus infection[J]. Front Immunol, 2021, 12:571509. DOI:10. 3389/fimmu. 2021. 571509.

[59]Visser LJ, Medina GN, Rabouw HH, et al. Foot-andmouth disease virus leader protease cleaves G3BP1 and G3BP2 and inhibits stress granule formation[J]. J Virol, 2019, 93(2):e00922-18. DOI:10. 1128/JVI. 00922-18.

[60]Zhang XY, Li YY, Huang HX, et al. Seneca Valley virus 3Cpro antagonizes host innate immune responses and programmed cell death[J]. Front Microbiol, 2023, 14:1235620. DOI:10. 3389/fmicb. 2023. 1235620.

[61]Wen W, Zhao Q, Yin M, et al. Seneca valley virus 3C protease inhibits stress granule formation by disrupting eIF4GI-G3BP1 interaction[J]. Front Immunol, 2020,11:577838. DOI:10. 3389/fimmu. 2020. 577838.

[62]Hopfner KP, Hornung V. Molecular mechanisms and cellular functions of cGAS-STING signalling[J]. Nat Rev Mol Cell Biol, 2020, 21(9):501-521. DOI:10. 1038/s41580-020-0244-x.

[63]Ablasser A, Goldeck M, Cavlar T, et al. cGAS produces a 2'-5'-linked cyclic dinucleotide second messenger that activates STING[J]. Nature, 2013, 498(7454):380-384. DOI:10. 1038/nature12306.

[64]Decout A, Katz JD, Venkatraman S, et al. The cGASSTING pathway as a therapeutic target in inflammatory diseases[J]. Nat Rev Immunol, 2021, 21(9):548-569. DOI:10. 1038/s41577-021-00524-z.

[65]Xie W, Lama L, Adura C, et al. Human cGAS catalytic domain has an additional DNA-binding interface that enhances enzymatic activity and liquid-phase condensation[J]. Proc Natl Acad Sci USA, 2019, 116(24):11946-11955. DOI:10. 1073/pnas. 1905013116.

[66]Du M, Chen ZJ. DNA-induced liquid phase condensation of cGAS activates innate immune signaling[J]. Science, 2018, 361(6403):704-709. DOI:10. 1126/science. aat1022.

[67]田娇,谢正德.病毒逃逸cGAS-STING通路介导的抗病毒免疫机制研究进展[J].病毒学报,2024, 40(3):641-651.DOI:10. 13242/j.cnki.bingduxuebao. 004497.

[68]Yu X, Zhang L, Shen J, et al. The STING phaseseparator suppresses innate immune signalling[J]. Nat Cell Biol, 2021, 23(4):330-340. DOI:10. 1038/s41556-021-00659-0.

[69]Chen S, Rong M, Lv Y, et al. Regulation of cGAS activity by RNA-modulated phase separation[J].EMBO Rep, 2023, 24(2):e51800. DOI:10. 15252/embr. 202051800.

[70]Wang X, Wang Y, Cao A, et al. Development of cyclopeptide inhibitors of cGAS targeting protein-DNA interaction and phase separation[J]. Nat Commun,2023, 14(1):6132. DOI:10. 1038/s41467-023-41892-5.

[71]Liu D, Lum KK, Treen N, et al. IFI16 phase separation via multi-phosphorylation drives innate immune signaling[J]. Nucleic Acids Res, 2023, 51(13):6819-6840. DOI:10. 1093/nar/gkad449.

[72]Yang H, Rao Z. Structural biology of SARS-CoV-2and implications for therapeutic development[J]. Nat Rev Microbiol, 2021, 19(11):685-700. DOI:10. 1038/s41579-021-00630-8.

[73]Wang S, Dai T, Qin Z, et al. Targeting liquid-liquid phase separation of SARS-CoV-2 nucleocapsid protein promotes innate antiviral immunity by elevating MAVS activity[J]. Nat Cell Biol, 2021, 23(7):718-732.DOI:10. 1038/s41556-021-00710-0.

[74]姜子玮,李晨辉,赵颖,等. SARS-CoV-2核衣壳蛋白相分离研究进展[J].病毒学报,2022, 38(01):175-186. DOI:10. 13242/j. cnki. bingduxuebao. 004086.

基本信息:

DOI:10.13242/j.cnki.bingduxuebao.240245

中图分类号:R511

引用信息:

[1]刘雅琪,刘茜,岑山.液-液相分离在病毒感染中的研究进展[J].病毒学报,2025,41(02):608-617.DOI:10.13242/j.cnki.bingduxuebao.240245.

基金信息:

中国医学科学院医学与健康科技创新工程(项目号:2021-I2M-1-038),题目:应对新发突发传染病应急防控生物安全保障关键技术研究; 国家自然科学基金项目(项目号:32400139),题目:MOV10非经典途径募集DCP2介导LINE-1 RNA脱帽机制的研究~~

投稿时间:

2024-10-14

投稿日期(年):

2024

终审时间:

2025-02-11

终审日期(年):

2025

修回时间:

2025-01-03

审稿周期(年):

1

发布时间:

2025-02-11

出版时间:

2025-02-11

网络发布时间:

2025-02-11

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